All Batches Excluding Those Recently Identified as Missing
[1] “01-0993 D0 AND 07-1147 DAY0_normalized–time_cut.fcs” [1] 3 1 2
01-0993 D0 AND 07-1147 DAY0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] "01_0673 d0 09_0462 d0 _1_1–time_cut.fcs" [1] 6 4 5
01_0673 d0 09_0462 d0 _1_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “01_0782 day0 and day180 06sep2017_normalized–time_cut.fcs” [1] 9 7 8
01_0782 day0 and day180 06sep2017_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “02-0185 DO AND 09-0296 D0 29SEP2017_normalized–time_cut.fcs” [1] 12 10 11
02-0185 DO AND 09-0296 D0 29SEP2017_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “03-0697 D0 and 03-0545 D0_normalized–time_cut.fcs” [1] 15 13 14
03-0697 D0 and 03-0545 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “03_0442 D0 and 09_0248 D0_normalized–time_cut.fcs” [1] 18 16 17
03_0442 D0 and 09_0248 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “03_0448 D0 and 09_0581 D0_normalized–time_cut.fcs” [1] 21 19 20
03_0448 D0 and 09_0581 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04-0718 D0 AND 04-0886 D0_normalized–time_cut.fcs” [1] 24 22 23
04-0718 D0 AND 04-0886 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04-0718 D180 AND 04-0886 D180_normalized–time_cut.fcs” [1] 27 25 26
04-0718 D180 AND 04-0886 D180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04-0910 D360 AND 07-1132 D360_normalized–time_cut.fcs” [1] 30 28 29
04-0910 D360 AND 07-1132 D360_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04-1056 D360 PLUS 04-0979 D360_normalized–time_cut.fcs” [1] 33 31 32
04-1056 D360 PLUS 04-0979 D360_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0152 D0 AND 04_0152 D180_normalized–time_cut.fcs” [1] 36 34 35
04_0152 D0 AND 04_0152 D180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0152 d360 and d540_3_1–time_cut.fcs” [1] 39 37 38
04_0152 d360 and d540_3_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0238 d0and d180-2_normalized–time_cut.fcs” [1] 42 40 41
04_0238 d0and d180-2_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0511 D0 AND 04_1119 D0_normalized–time_cut.fcs” [1] 45 43 44
04_0511 D0 AND 04_1119 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0695 D360 and 04_0695 D540_normalized_–time_cut.fcs” [1] 48 46 47
04_0695 D360 and 04_0695 D540_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0695 do and d180_4_1–time_cut.fcs” [1] 51 49 50
04_0695 do and d180_4_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0718 d360 and 04_0886 d360_normalized–time_cut.fcs” [1] 54 52 53
04_0718 d360 and 04_0886 d360_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0741_d0 and d180_normalized–time_cut.fcs” [1] 57 55 56
04_0741_d0 and d180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0779 D0 AND 07_0369 D0_normalized–time_cut.fcs” [1] 60 58 59
04_0779 D0 AND 07_0369 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0811D180 AND 07_1153 D180_normalized–time_cut.fcs” [1] 63 61 62
04_0811D180 AND 07_1153 D180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0843 D0 AND 04_0843 D180_normalized–time_cut.fcs” [1] 66 64 65
04_0843 D0 AND 04_0843 D180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0843 d360 and 04_0843 d540_normalized–time_cut.fcs” [1] 69 67 68
04_0843 d360 and 04_0843 d540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0910 d0 and 07_1132 d0_normalized–time_cut.fcs” [1] 72 70 71
04_0910 d0 and 07_1132 d0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_0910 D540 AND 07_1132 D540_normalized–time_cut.fcs” [1] 75 73 74
04_0910 D540 AND 07_1132 D540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_1020 D360 and 04_1020 D540_normalized–time_cut.fcs” [1] 78 76 77
04_1020 D360 and 04_1020 D540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_1020D0 and 04_1020 D180_normalized_–time_cut.fcs” [1] 81 79 80
04_1020D0 and 04_1020 D180_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_1056 d0 and 04_0979 d0_normalized–time_cut.fcs” [1] 84 82 83
04_1056 d0 and 04_0979 d0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_1056 d180 and 04_0979 d180_normalized–time_cut.fcs” [1] 87 85 86
04_1056 d180 and 04_0979 d180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_1104 d0 and d180_2_1–time_cut.fcs” [1] 90 88 89
04_1104 d0 and d180_2_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_1241 D0 AND 07_0119 D0_normalized–time_cut.fcs” [1] 93 91 92
04_1241 D0 AND 07_0119 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “04_1241 d180 and 07_0119 d180_normalized_–time_cut.fcs” [1] 96 94 95
04_1241 d180 and 07_0119 d180_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “040238 d0and d180-2_normalized–time_cut.fcs” [1] 99 97 98
040238 d0and d180-2_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07-0135 DO AND 09-0406 DO. FCS_normalized–time_cut.fcs” [1] 102 100 101
07-0135 DO AND 09-0406 DO. FCS_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07-0259 D360 and 04-1067 D360_normalized–time_cut.fcs” [1] 105 103 104
07-0259 D360 and 04-1067 D360_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07-0262 D360 AND 540 27NOV2017_normalized–time_cut.fcs” [1] 108 106 107
07-0262 D360 AND 540 27NOV2017_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07-0262 DO AND D180 24NOV2017_normalized–time_cut.fcs” [1] 111 109 110
07-0262 DO AND D180 24NOV2017_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07-0692 D360 AND 04-1058 D360_normalized_–time_cut.fcs” [1] 114 112 113
07-0692 D360 AND 04-1058 D360_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0060 D360 AND 04_0699 D360_normalized–time_cut.fcs” [1] 117 115 116
07_0060 D360 AND 04_0699 D360_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0150 D0 AND D180_2_1–time_cut.fcs” [1] 120 118 119
07_0150 D0 AND D180_2_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0177 D0 AND 07_0177 D180_normalized–time_cut.fcs” [1] 123 121 122
07_0177 D0 AND 07_0177 D180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0208 D0 and D540_normalized–time_cut.fcs” [1] 126 124 125
07_0208 D0 and D540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0214 DE360 and D540_normalized_–time_cut.fcs” [1] 129 127 128
07_0214 DE360 and D540_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0236 D0 AND D180_3_1–time_cut.fcs” [1] 132 130 131
07_0236 D0 AND D180_3_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0259 d0 and 04_1067 d0_normalized–time_cut.fcs” [1] 135 133 134
07_0259 d0 and 04_1067 d0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0386 D0 and D540_normalized–time_cut.fcs” [1] 138 136 137
07_0386 D0 and D540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0390 D0 and D540_normalized–time_cut.fcs” [1] 141 139 140
07_0390 D0 and D540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0424 d0 and d540_normalized_–time_cut.fcs” [1] 144 142 143
07_0424 d0 and d540_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0425D0 and D180_normalized–time_cut.fcs” [1] 147 145 146
07_0425D0 and D180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0561 D0 AND D180_normalized–time_cut.fcs” [1] 150 148 149
07_0561 D0 AND D180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0630 D0 AND 07_0630 D180_normalized_–time_cut.fcs” [1] 153 151 152
07_0630 D0 AND 07_0630 D180_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0630 d360 and 07_0630 d540_normalized–time_cut.fcs” [1] 156 154 155
07_0630 d360 and 07_0630 d540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] "07_0663 d360 and 07_0663 d540 _2_normalized–time_cut.fcs" [1] 159 157 158
07_0663 d360 and 07_0663 d540 _2_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0692 D0 AND 04_1058 D0_normalized–time_cut.fcs” [1] 162 160 161
07_0692 D0 AND 04_1058 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0692 d180 and 04_1058 d180_normalized–time_cut.fcs” [1] 165 163 164
07_0692 d180 and 04_1058 d180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_1003 day360 and day540_normalized–time_cut.fcs” [1] 168 166 167
07_1003 day360 and day540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_1115_1_1–time_cut.fcs” [1] 171 169 170
07_1115_1_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_1153 D540 AND 07_0811 D540_4_1–time_cut.fcs” [1] 174 172 173
07_1153 D540 AND 07_0811 D540_4_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_1158 d360 and 07_1158 d540_normalized_–time_cut.fcs” [1] 177 175 176
07_1158 d360 and 07_1158 d540_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “09_0314 D0 AND 01_0978 D0_normalized–time_cut.fcs” [1] 180 178 179
09_0314 D0 AND 01_0978 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “09_0453 d0 and 09_0745 D0_normalized–time_cut.fcs” [1] 183 181 182
09_0453 d0 and 09_0745 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “09_0467 d0 and 09_0278 d0_normalized_–time_cut.fcs” [1] 186 184 185
09_0467 d0 and 09_0278 d0_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “09_0507 d0 09_0587 d0_normalized–time_cut.fcs” [1] 189 187 188
09_0507 d0 09_0587 d0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “09_0569 D0 and 09_0529 D0_normalized–time_cut.fcs” [1] 192 190 191
09_0569 D0 and 09_0529 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “09_0789 D0 AND 09_0712 D0_normalized–time_cut.fcs” [1] 195 193 194
09_0789 D0 AND 09_0712 D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “29NOV2017 07-0080D360 AND 07-0080 D540_normalized–time_cut.fcs” [1] 198 196 197
29NOV2017 07-0080D360 AND 07-0080 D540_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “30NOV2017 07-0080 DAY0 AND 07-0080 DAY180_normalized–time_cut.fcs” [1] 201 199 200
30NOV2017 07-0080 DAY0 AND 07-0080 DAY180_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “frozen 07_0060 d180 and 04_0699 d180_6_1–time_cut.fcs” [1] 204 202 203
frozen 07_0060 d180 and 04_0699 d180_6_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “FROZEN 20FEB TO 09MAR_ 07_1153 D360 AND 07_0811 D360_normalized–time_cut.fcs” [1] 207 205 206
FROZEN 20FEB TO 09MAR_ 07_1153 D360 AND 07_0811 D360_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “FROZEN_04_1241 d360 and 07_0119 d360_normalized_–time_cut.fcs” [1] 210 208 209
FROZEN_04_1241 d360 and 07_0119 d360_normalized_–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “FROZEN_07_0060 D0 AND 04_0699D0_normalized–time_cut.fcs” [1] 213 211 212
FROZEN_07_0060 D0 AND 04_0699D0_normalized–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “miguel-concat-replace-04_0333_D0_AND_D180_1_TOGETHER_1–time_cut.fcs” [1] 216 214 215
miguel-concat-replace-04_0333_D0_AND_D180_1_TOGETHER_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “miguel-from_r-06_0127 and 06_0127b_5_1–time_cut.fcs” [1] 219 217 218
miguel-from_r-06_0127 and 06_0127b_5_1–time_cut.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition

Previously missing CyTOF files
[1] “07_0177 d360 and 07_0177 d540_cells_found_normalized_debeaded.fcs-.fcs” [1] 3 1 2
07_0177 d360 and 07_0177 d540_cells_found_normalized_debeaded.fcs-.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
[1] “07_0663 D0 AND 07_0663 D180_cells_found_normalized_debeaded.fcs-.fcs” [1] 6 4 5
07_0663 D0 AND 07_0663 D180_cells_found_normalized_debeaded.fcs-.fcs
IFNg vs Beads for live singlets

IFNg vs beads for live singlets by stim condition

IFNg vs TNF for CD4 T cells by stim condition
